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SRX23073916: Genome sequencing of Xcc WHRI 6056
1 OXFORD_NANOPORE (MinION) run: 18,155 spots, 119.4M bases, 99.7Mb downloads

Design: Flowcell type: FLO-FLG001. Kit: SQK-LSK109
Submitted by: University of Exeter
Study: Genome sequencing of Xanthomonas campestris pv. campestris from WHRI collection
show Abstracthide Abstract
The genus Xanthomonas includes bacterial plant pathogens of more than 350 plant species including many crop plants. For example Xanthomonas campestris pv. campestris (Xcc) causes black rot in brassicas such as cabbage, cauliflower, broccoli, Brussels sprouts, kale, oilseed rape, swede, turnip and mustards. This disease is considered the most important disease of vegetable brassicas worldwide and it occurs annualy in UK brassica growing areas including Lincolnshire and Cornwall. As this disease is more problematic in hot and humid weather, the severity of outbreaks could increase with climate change.The WHRI (Warwick Horticulture Research International) is now part of the University of Warwick.
Sample: Microbe sample from Xanthomonas campestris pv. campestris
SAMN43274174 • SRS22411979 • All experiments • All runs
Library:
Name: 6056_ONT
Instrument: MinION
Strategy: WGS
Source: GENOMIC
Selection: size fractionation
Layout: SINGLE
Runs: 1 run, 18,155 spots, 119.4M bases, 99.7Mb
Run# of Spots# of BasesSizePublished
SRR2739768018,155119.4M99.7Mb2024-01-02

ID:
31166938

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